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Kirk J C Czymmek

TitleSupplemental Faculty
InstitutionUniversity of Delaware
DepartmentBiological Sciences
Address105 The Green
Newark DE 19716
Phone302-831-3450
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Huang K, Caplan J, Sweigard JA, Czymmek KJ, Donofrio NM. Optimization of the HyPer sensor for robust real-time detection of hydrogen peroxide in the rice blast fungus. Mol Plant Pathol. 2017 Feb; 18(2):298-307. PMID: 26950262.
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    2. Burch-Smith TM, Schiff M, Caplan JL, Tsao J, Czymmek K, Dinesh-Kumar SP. Correction: A Novel Role for the TIR Domain in Association with Pathogen-Derived Elicitors. PLoS Biol. 2016 Jan; 14(1):e1002374. PMID: 26807877.
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    3. Sydor AM, Czymmek KJ, Puchner EM, Mennella V. Super-Resolution Microscopy: From Single Molecules to Supramolecular Assemblies. Trends Cell Biol. 2015 Dec; 25(12):730-48. PMID: 26546293.
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    4. Kim HS, Kim JE, Frailey D, Nohe A, Duncan R, Czymmek KJ, Kang S. Roles of three Fusarium oxysporum calcium ion (Ca(2+)) channels in generating Ca(2+) signatures and controlling growth. Fungal Genet Biol. 2015 Sep; 82:145-57. PMID: 26162966.
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    5. Caplan JL, Kumar AS, Park E, Padmanabhan MS, Hoban K, Modla S, Czymmek K, Dinesh-Kumar SP. Chloroplast Stromules Function during Innate Immunity. Dev Cell. 2015 Jul 6; 34(1):45-57. PMID: 26120031.
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    6. Modla S, Caplan JL, Czymmek KJ, Lee JY. Localization of fluorescently tagged protein to plasmodesmata by correlative light and electron microscopy. Methods Mol Biol. 2015; 1217:121-33. PMID: 25287200.
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    7. Gangadharan V, Nohe A, Caplan J, Czymmek K, Duncan RL. Caveolin-1 regulates P2X7 receptor signaling in osteoblasts. Am J Physiol Cell Physiol. 2015 Jan 1; 308(1):C41-50. PMID: 25318104.
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    8. Jansson KH, Castillo DG, Morris JW, Boggs ME, Czymmek KJ, Adams EL, Schramm LP, Sikes RA. Identification of Beta-2 as a Key Cell Adhesion Molecule in PCa Cell Neurotropic Behavior: A Novel Ex Vivo and Biophysical Approach. PLoS One. 2014; 9(6):e98408. PMID: 24892658.
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    9. Gardinier J, Yang W, Madden GR, Kronbergs A, Gangadharan V, Adams E, Czymmek K, Duncan RL. P2Y2 receptors regulate osteoblast mechanosensitivity during fluid flow. Am J Physiol Cell Physiol. 2014 Jun 1; 306(11):C1058-67. PMID: 24696143.
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    10. Scheiblin DA, Gao J, Caplan JL, Simirskii VN, Czymmek KJ, Mathias RT, Duncan MK. Beta-1 integrin is important for the structural maintenance and homeostasis of differentiating fiber cells. Int J Biochem Cell Biol. 2014 May; 50:132-45. PMID: 24607497.
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    11. Cao T, Zach C, Modla S, Powell D, Czymmek K, Niethammer M. Multi-modal registration for correlative microscopy using image analogies. Med Image Anal. 2014 Aug; 18(6):914-26. PMID: 24387943.
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    12. Mathioni SM, Patel N, Riddick B, Sweigard JA, Czymmek KJ, Caplan JL, Kunjeti SG, Kunjeti S, Raman V, Hillman BI, Kobayashi DY, Donofrio NM. Transcriptomics of the Rice Blast Fungus Magnaporthe oryzae in Response to the Bacterial Antagonist Lysobacter enzymogenes Reveals Candidate Fungal Defense Response Genes. PLoS One. 2013; 8(10):e76487. PMID: 24098512.
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    13. Padmanabhan MS, Ma S, Burch-Smith TM, Czymmek K, Huijser P, Dinesh-Kumar SP. Novel Positive Regulatory Role for the SPL6 Transcription Factor in the N TIR-NB-LRR Receptor-Mediated Plant Innate Immunity. PLoS Pathog. 2013 Mar; 9(3):e1003235. PMID: 23516366.
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    14. Agrawal B, Czymmek KJ, Sparks DL, Bais HP. Transient Influx of Nickel in Root Mitochondria Modulates Organic Acid and Reactive Oxygen Species Production in Nickel Hyperaccumulator Alyssum murale. J Biol Chem. 2013 Mar 8; 288(10):7351-62. PMID: 23322782.
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    15. Cao T, Jojic V, Modla S, Powell D, Czymmek K, Niethammer M. Robust multimodal dictionary learning. Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):259-66. PMID: 24505674.
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    16. Krishnan V, Xu X, Barwe SP, Yang X, Czymmek K, Waldman SA, Mason RW, Jia X, Rajasekaran AK. Dexamethasone-loaded block copolymer nanoparticles induce leukemia cell death and enhance therapeutic efficacy: a novel application in pediatric nanomedicine. Mol Pharm. 2013 Jun 3; 10(6):2199-210. PMID: 23194373.
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    17. Opitz AW, Czymmek KJ, Wickstrom E, Wagner NJ. Uptake, efflux, and mass transfer coefficient of fluorescent PAMAM dendrimers into pancreatic cancer cells. Biochim Biophys Acta. 2013 Feb; 1828(2):294-301. PMID: 23022133.
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    18. Kumar AS, Lakshmanan V, Caplan JL, Powell D, Czymmek KJ, Levia DF, Bais HP. Rhizobacteria Bacillus subtilis restricts foliar pathogen entry through stomata. Plant J. 2012 Nov; 72(4):694-706. PMID: 22862801.
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    19. Demir-Hilton E, Hutchins DA, Czymmek KJ, Coyne KJ. DESCRIPTION OF VIRIDILOBUS MARINUS (GEN. ET SP. NOV.), A NEW RAPHIDOPHYTE FROM DELAWARE'S INLAND BAYS. J Phycol. 2012 Oct; 48(5):1220-31. PMID: 27011281.
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    20. Wagner R, Modla S, Hossler F, Czymmek K. Three-dimensional analysis and computer modeling of the capillary endothelial vesicular system with electron tomography. Microcirculation. 2012 Aug; 19(6):477-84. PMID: 22435898.
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    21. Wei D, Jacobs S, Modla S, Zhang S, Young CL, Cirino R, Caplan J, Czymmek K. High-resolution three-dimensional reconstruction of a whole yeast cell using focused-ion beam scanning electron microscopy. Biotechniques. 2012 Jul; 53(1):41-8. PMID: 22780318.
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    22. Bonor J, Adams EL, Bragdon B, Moseychuk O, Czymmek KJ, Nohe A. Initiation of BMP2 signaling in domains on the plasma membrane. J Cell Physiol. 2012 Jul; 227(7):2880-8. PMID: 21938723.
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    23. Kim HS, Czymmek KJ, Patel A, Modla S, Nohe A, Duncan R, Gilroy S, Kang S. Expression of the Cameleon calcium biosensor in fungi reveals distinct Ca(2+) signatures associated with polarized growth, development, and pathogenesis. Fungal Genet Biol. 2012 Aug; 49(8):589-601. PMID: 22683653.
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    24. Young CL, Raden DL, Caplan JL, Czymmek KJ, Robinson AS. Cassette series designed for live-cell imaging of proteins and high-resolution techniques in yeast. Yeast. 2012 Mar; 29(3-4):119-36. PMID: 22473760.
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    25. Yan C, Mackay ME, Czymmek K, Nagarkar RP, Schneider JP, Pochan DJ. Injectable solid peptide hydrogel as a cell carrier: effects of shear flow on hydrogels and cell payload. Langmuir. 2012 Apr 10; 28(14):6076-87. PMID: 22390812.
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    26. Adams E, Emerson D, Croker S, Kim HS, Modla S, Kang S, Czymmek K. Atomic force microscopy: a tool for studying biophysical surface properties underpinning fungal interactions with plants and substrates. Methods Mol Biol. 2012; 835:151-64. PMID: 22183653.
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    27. Knapp E, Flores R, Scheiblin D, Scheiblin D, Modla S, Czymmek K, Czymmek K, Yusibov V. A cryohistological protocol for preparation of large plant tissue sections for screening intracellular fluorescent protein expression. Biotechniques. 2012 Jan; 52(1):31-7. PMID: 22229725.
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    28. Jansson KH, Lynch JE, Lepori-Bui N, Czymmek KJ, Duncan RL, Sikes RA. Overexpression of the VSSC-associated CAM, ß-2, enhances LNCaP cell metastasis associated behavior. Prostate. 2012 Jul 1; 72(10):1080-92. PMID: 22127840.
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    29. Huang K, Czymmek KJ, Caplan JL, Sweigard JA, Donofrio NM. Suppression of plant-generated reactive oxygen species is required for successful infection by the rice blast fungus. Virulence. 2011 Nov-Dec; 2(6):559-62. PMID: 21971181.
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    30. Lee JY, Wang X, Cui W, Sager R, Modla S, Czymmek K, Zybaliov B, van Wijk K, Zhang C, Lu H, Lakshmanan V. A plasmodesmata-localized protein mediates crosstalk between cell-to-cell communication and innate immunity in Arabidopsis. Plant Cell. 2011 Sep; 23(9):3353-73. PMID: 21934146.
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    31. Thévenin AF, Monillas ES, Winget JM, Czymmek K, Bahnson BJ. Trafficking of platelet-activating factor acetylhydrolase type II in response to oxidative stress. Biochemistry. 2011 Oct 4; 50(39):8417-26. PMID: 21882811.
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    32. Thompson WR, Majid AS, Czymmek KJ, Ruff AL, García J, Duncan RL, Farach-Carson MC. Association of the a(2)d(1) subunit with Ca(v)3.2 enhances membrane expression and regulates mechanically induced ATP release in MLO-Y4 osteocytes. J Bone Miner Res. 2011 Sep; 26(9):2125-39. PMID: 21638318.
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    33. Caplan J, Niethammer M, Taylor RM, Czymmek KJ. The power of correlative microscopy: multi-modal, multi-scale, multi-dimensional. Curr Opin Struct Biol. 2011 Oct; 21(5):686-93. PMID: 21782417.
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    34. Modla S, Czymmek KJ. Correlative microscopy: a powerful tool for exploring neurological cells and tissues. Micron. 2011 Dec; 42(8):773-92. PMID: 21782457.
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    35. Kim HS, Park SY, Lee S, Adams EL, Czymmek K, Kang S. Loss of cAMP-dependent protein kinase A affects multiple traits important for root pathogenesis by Fusarium oxysporum. Mol Plant Microbe Interact. 2011 Jun; 24(6):719-32. PMID: 21261464.
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    36. Huang K, Czymmek KJ, Caplan JL, Sweigard JA, Donofrio NM. HYR1-mediated detoxification of reactive oxygen species is required for full virulence in the rice blast fungus. PLoS Pathog. 2011 Apr; 7(4):e1001335. PMID: 21533213.
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    37. Koku H, Maier RS, Czymmek KJ, Schure MR, Lenhoff AM. Modeling of flow in a polymeric chromatographic monolith. J Chromatogr A. 2011 Jun 3; 1218(22):3466-75. PMID: 21529814.
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    38. Thompson WR, Modla S, Grindel BJ, Czymmek KJ, Kirn-Safran CB, Wang L, Duncan RL, Farach-Carson MC. Perlecan/Hspg2 deficiency alters the pericellular space of the lacunocanalicular system surrounding osteocytic processes in cortical bone. J Bone Miner Res. 2011 Mar; 26(3):618-29. PMID: 20814969.
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    39. Li M, Czymmek KJ, Huang CP. Responses of Ceriodaphnia dubia to TiO2 and Al2O3 nanoparticles: a dynamic nano-toxicity assessment of energy budget distribution. J Hazard Mater. 2011 Mar 15; 187(1-3):502-8. PMID: 21315509.
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    40. Wagner R, Van Loo D, Hossler F, Czymmek K, Pauwels E, Van Hoorebeke L. High-resolution imaging of kidney vascular corrosion casts with Nano-CT. Microsc Microanal. 2011 Apr; 17(2):215-9. PMID: 21122193.
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    41. Modla S, Mendonca J, Czymmek KJ, Akins RE. Identification of neuromuscular junctions by correlative confocal and transmission electron microscopy. J Neurosci Methods. 2010 Aug 30; 191(2):158-65. PMID: 20600319.
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    42. Khang CH, Berruyer R, Giraldo MC, Kankanala P, Park SY, Czymmek K, Kang S, Valent B. Translocation of Magnaporthe oryzae effectors into rice cells and their subsequent cell-to-cell movement. Plant Cell. 2010 Apr; 22(4):1388-403. PMID: 20435900.
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    43. Rudrappa T, Biedrzycki ML, Kunjeti SG, Donofrio NM, Czymmek KJ, Paré PW, Bais HP. The rhizobacterial elicitor acetoin induces systemic resistance in Arabidopsis thaliana. Commun Integr Biol. 2010 Mar; 3(2):130-8. PMID: 20585504.
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    44. Zhu X, Caplan J, Mamillapalli P, Czymmek K, Dinesh-Kumar SP. Function of endoplasmic reticulum calcium ATPase in innate immunity-mediated programmed cell death. EMBO J. 2010 Mar 3; 29(5):1007-18. PMID: 20075858.
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    45. Danysh BP, Patel TP, Czymmek KJ, Edwards DA, Wang L, Pande J, Duncan MK. Characterizing molecular diffusion in the lens capsule. Matrix Biol. 2010 Apr; 29(3):228-36. PMID: 20026402.
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    46. Bowes BD, Koku H, Czymmek KJ, Lenhoff AM. Protein adsorption and transport in dextran-modified ion-exchange media. I: adsorption. J Chromatogr A. 2009 Nov 6; 1216(45):7774-84. PMID: 19801150.
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    47. Trilisky EI, Koku H, Czymmek KJ, Lenhoff AM. Relation of structure to performance characteristics of monolithic and perfusive stationary phases. J Chromatogr A. 2009 Sep 4; 1216(36):6365-76. PMID: 19646709.
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    48. Shao Y, Czymmek KJ, Jones PA, Fomin VP, Akanbi K, Duncan RL, Farach-Carson MC. Dynamic interactions between L-type voltage-sensitive calcium channel Cav1.2 subunits and ahnak in osteoblastic cells. Am J Physiol Cell Physiol. 2009 May; 296(5):C1067-78. PMID: 19261907.
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    49. Danysh BP, Czymmek KJ, Olurin PT, Sivak JG, Duncan MK. Contributions of mouse genetic background and age on anterior lens capsule thickness. Anat Rec (Hoboken). 2008 Dec; 291(12):1619-27. PMID: 18951502.
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    50. Rudrappa T, Czymmek KJ, Paré PW, Bais HP. Root-secreted malic acid recruits beneficial soil bacteria. Plant Physiol. 2008 Nov; 148(3):1547-56. PMID: 18820082.
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    51. Morgan-Kiss RM, Chan LK, Modla S, Weber TS, Warner M, Czymmek KJ, Hanson TE. Chlorobaculum tepidum regulates chlorosome structure and function in response to temperature and electron donor availability. Photosynth Res. 2009 Jan; 99(1):11-21. PMID: 18798007.
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    52. Cooper CR, Graves B, Pruitt F, Chaib H, Lynch JE, Cox AK, Sequeria L, van Golen KL, Evans A, Czymmek K, Bullard RS, Donald CD, Sol-Church K, Gendernalik JD, Weksler B, Farach-Carson MC, Macoska JA, Sikes RA, Pienta KJ. Novel surface expression of reticulocalbin 1 on bone endothelial cells and human prostate cancer cells is regulated by TNF-alpha. J Cell Biochem. 2008 Aug 15; 104(6):2298-309. PMID: 18561328.
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    53. Morgan-Kiss RM, Ivanov AG, Modla S, Czymmek K, Hüner NP, Priscu JC, Lisle JT, Hanson TE. Identity and physiology of a new psychrophilic eukaryotic green alga, Chlorella sp., strain BI, isolated from a transitory pond near Bratina Island, Antarctica. Extremophiles. 2008 Sep; 12(5):701-11. PMID: 18661097.
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    54. Kumar A, Kamboj S, Malone BM, Kudo S, Twiss JL, Czymmek KJ, LaSalle JM, Schanen NC. Analysis of protein domains and Rett syndrome mutations indicate that multiple regions influence chromatin-binding dynamics of the chromatin-associated protein MECP2 in vivo. J Cell Sci. 2008 Apr 1; 121(Pt 7):1128-37. PMID: 18334558.
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    55. Caplan JL, Mamillapalli P, Burch-Smith TM, Czymmek K, Dinesh-Kumar SP. Chloroplastic protein NRIP1 mediates innate immune receptor recognition of a viral effector. Cell. 2008 Feb 8; 132(3):449-62. PMID: 18267075.
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    56. Fondong VN, Reddy RV, Lu C, Hankoua B, Felton C, Czymmek K, Achenjang F. The consensus N-myristoylation motif of a geminivirus AC4 protein is required for membrane binding and pathogenicity. Mol Plant Microbe Interact. 2007 Apr; 20(4):380-91. PMID: 17427808.
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    57. Burch-Smith TM, Schiff M, Caplan JL, Tsao J, Czymmek K, Dinesh-Kumar SP. A novel role for the TIR domain in association with pathogen-derived elicitors. PLoS Biol. 2007 Mar; 5(3):e68. PMID: 17298188.
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    58. Kankanala P, Czymmek K, Valent B. Roles for rice membrane dynamics and plasmodesmata during biotrophic invasion by the blast fungus. Plant Cell. 2007 Feb; 19(2):706-24. PMID: 17322409.
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    59. Czymmek KJ, Fogg M, Powell DH, Sweigard J, Park SY, Kang S. In vivo time-lapse documentation using confocal and multi-photon microscopy reveals the mechanisms of invasion into the Arabidopsis root vascular system by Fusarium oxysporum. Fungal Genet Biol. 2007 Oct; 44(10):1011-23. PMID: 17379550.
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    60. Yao Y, Czymmek KJ, Pazhianur R, Lenhoff AM. Three-dimensional pore structure of chromatographic adsorbents from electron tomography. Langmuir. 2006 Dec 19; 22(26):11148-57. PMID: 17154596.
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    61. Kang LI, Wang Y, Suckow AT, Czymmek KJ, Cooke VG, Naik UP, Duncan MK. Deletion of JAM-A causes morphological defects in the corneal epithelium. Int J Biochem Cell Biol. 2007; 39(3):576-85. PMID: 17118692.
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    62. Catalano CM, Czymmek KJ, Gann JG, Sherrier DJ. Medicago truncatula syntaxin SYP132 defines the symbiosome membrane and infection droplet membrane in root nodules. Planta. 2007 Feb; 225(3):541-50. PMID: 16944200.
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    63. Wagner RC, Czymmek K, Hossler FE. Confocal microscopy, computer modeling, and quantification of glomerular vascular corrosion casts. Microsc Microanal. 2006 Jun; 12(3):262-8. PMID: 17481362.
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    64. Anobile JM, Arumugaswami V, Downs D, Czymmek K, Parcells M, Schmidt CJ. Nuclear localization and dynamic properties of the Marek's disease virus oncogene products Meq and Meq/vIL8. J Virol. 2006 Feb; 80(3):1160-6. PMID: 16414993.
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    65. Liu Y, Schiff M, Czymmek K, Tallóczy Z, Levine B, Dinesh-Kumar SP. Autophagy regulates programmed cell death during the plant innate immune response. Cell. 2005 May 20; 121(4):567-77. PMID: 15907470.
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    66. Czymmek KJ, Bourett TM, Shao Y, DeZwaan TM, Sweigard JA, Howard RJ. Live-cell imaging of tubulin in the filamentous fungus Magnaporthe grisea treated with anti-microtubule and anti-microfilament agents. Protoplasma. 2005 Apr; 225(1-2):23-32. PMID: 15868210.
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    67. Fuchs U, Czymmek KJ, Sweigard JA. Five hydrophobin genes in Fusarium verticillioides include two required for microconidial chain formation. Fungal Genet Biol. 2004 Sep; 41(9):852-64. PMID: 15288021.
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    68. Biehn SE, Czymmek KJ, Leavens KF, Karin NJ. Expression of the sarco/endoplasmic Ca(2+)-ATPase, SERCA1a, in fibroblasts induces the formation of organelle membrane arrays. Exp Cell Res. 2004 Jan 1; 292(1):78-88. PMID: 14720508.
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    69. Zhang C, Czymmek KJ, Shapiro AD. Nitric oxide does not trigger early programmed cell death events but may contribute to cell-to-cell signaling governing progression of the Arabidopsis hypersensitive response. Mol Plant Microbe Interact. 2003 Nov; 16(11):962-72. PMID: 14601664.
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    70. Bourett TM, Sweigard JA, Czymmek KJ, Carroll A, Howard RJ. Reef coral fluorescent proteins for visualizing fungal pathogens. Fungal Genet Biol. 2002 Dec; 37(3):211-20. PMID: 12431456.
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    71. Czymmek KJ, Bourett TM, Sweigard JA, Carroll A, Howard RJ. Utility of cytoplasmic fluorescent proteins for live-cell imaging of Magnaporthe grisea in planta. Mycologia. 2002 Mar-Apr; 94(2):280-9. PMID: 21156498.
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    72. O'Donnell LA, Clemmer JA, Czymmek K, Schmidt CJ. Marek's disease virus VP22: subcellular localization and characterization of carboxyl terminal deletion Mutations. Virology. 2002 Jan 20; 292(2):235-40. PMID: 11878926.
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    73. French MM, Gomes RR, Timpl R, Höök M, Czymmek K, Farach-Carson MC, Carson DD. Chondrogenic activity of the heparan sulfate proteoglycan perlecan maps to the N-terminal domain I. J Bone Miner Res. 2002 Jan; 17(1):48-55. PMID: 11771669.
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    74. Kirn-Safran CB, Julian J, Fongemie JE, Hoke DE, Czymmek KJ, Carson DD. Changes in the cytologic distribution of heparin/heparan sulfate interacting protein/ribosomal protein L29 (HIP/RPL29) during in vivo and in vitro mouse mammary epithelial cell expression and differentiation. Dev Dyn. 2002 Jan; 223(1):70-84. PMID: 11803571.
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