James Schwaber

TitleAssoc Professor
InstitutionThomas Jefferson University
DepartmentPathology
Address1020 Locust St.
Philadelphia PA 19107
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Prosniak M, Harshyne LA, Gorky J, Curtis MT, Kenyon LC, Schwaber JS, Lebrun A, Kean RB, Andrews DW, Hooper DC. Systemic Immune Bias Delineates Malignant Astrocytoma Survival Cohorts. J Immunol. 2021 Apr 01; 206(7):1483-1492. PMID: 33685995.
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    2. O'Sullivan SJ, Schwaber JS. Similarities in alcohol and opioid withdrawal syndromes suggest common negative reinforcement mechanisms involving the interoceptive antireward pathway. Neurosci Biobehav Rev. 2021 Jun; 125:355-364. PMID: 33647322.
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    3. Hanna P, Dacey MJ, Brennan J, Moss A, Robbins S, Achanta S, Biscola NP, Swid MA, Rajendran PS, Mori S, Hadaya JE, Smith EH, Peirce SG, Chen J, Havton LA, Cheng ZJ, Vadigepalli R, Schwaber J, Lux RL, Efimov I, Tompkins JD, Hoover DB, Ardell JL, Shivkumar K. Innervation and Neuronal Control of the Mammalian Sinoatrial Node a Comprehensive Atlas. Circ Res. 2021 Apr 30; 128(9):1279-1296. PMID: 33629877.
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    4. Gorky J, Moss A, Balycheva M, Vadigepalli R, Schwaber JS. Input-output signal processing plasticity of vagal motor neurons in response to cardiac ischemic injury. iScience. 2021 Mar 19; 24(3):102143. PMID: 33665562.
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    5. Achanta S, Gorky J, Leung C, Moss A, Robbins S, Eisenman L, Chen J, Tappan S, Heal M, Farahani N, Huffman T, England S, Cheng ZJ, Vadigepalli R, Schwaber JS. A Comprehensive Integrated Anatomical and Molecular Atlas of Rat Intrinsic Cardiac Nervous System. iScience. 2020 Jun 26; 23(6):101140. PMID: 32460006.
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    6. Park JH, Gorky J, Ogunnaike B, Vadigepalli R, Schwaber JS. Investigating the Effects of Brainstem Neuronal Adaptation on Cardiovascular Homeostasis. Front Neurosci. 2020; 14:470. PMID: 32508573.
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    7. Staehle MM, O'Sullivan S, Vadigepalli R, Kernan KF, Gonye GE, Ogunnaike BA, Schwaber JS. Diurnal Patterns of Gene Expression in the Dorsal Vagal Complex and the Central Nucleus of the Amygdala - Non-rhythm-generating Brain Regions. Front Neurosci. 2020; 14:375. PMID: 32477043.
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    8. O'Sullivan SJ, Reyes BAS, Vadigepalli R, Van Bockstaele EJ, Schwaber JS. Combining Laser Capture Microdissection and Microfluidic qPCR to Analyze Transcriptional Profiles of Single Cells: A Systems Biology Approach to Opioid Dependence. J Vis Exp. 2020 Mar 08; (157). PMID: 32202523.
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    9. Gorky J, Schwaber J. Conceptualization of a Parasympathetic Endocrine System. Front Neurosci. 2019; 13:1008. PMID: 31607849.
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    10. O'Sullivan SJ, Malahias E, Park J, Srivastava A, Reyes BAS, Gorky J, Vadigepalli R, Van Bockstaele EJ, Schwaber JS. Single-Cell Glia and Neuron Gene Expression in the Central Amygdala in Opioid Withdrawal Suggests Inflammation With Correlated Gut Dysbiosis. Front Neurosci. 2019; 13:665. PMID: 31333398.
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    11. Anderson WD, DeCicco D, Schwaber JS, Vadigepalli R. A data-driven modeling approach to identify disease-specific multi-organ networks driving physiological dysregulation. PLoS Comput Biol. 2017 Jul; 13(7):e1005627. PMID: 28732007.
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    12. Park J, Zhu H, O'Sullivan S, Ogunnaike BA, Weaver DR, Schwaber JS, Vadigepalli R. Single-Cell Transcriptional Analysis Reveals Novel Neuronal Phenotypes and Interaction Networks Involved in the Central Circadian Clock. Front Neurosci. 2016; 10:481. PMID: 27826225.
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    13. Marvar PJ, Hendy EB, Cruise TD, Walas D, DeCicco D, Vadigepalli R, Schwaber JS, Waki H, Murphy D, Paton JF. Systemic leukotriene B4 receptor antagonism lowers arterial blood pressure and improves autonomic function in the spontaneously hypertensive rat. J Physiol. 2016 Oct 15; 594(20):5975-5989. PMID: 27230966.
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    14. Anderson WD, Makadia HK, Greenhalgh AD, Schwaber JS, David S, Vadigepalli R. Computational modeling of cytokine signaling in microglia. Mol Biosyst. 2015 Nov 10; 11(12):3332-46. PMID: 26440115.
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    15. Makadia HK, Schwaber JS, Vadigepalli R. Intracellular Information Processing through Encoding and Decoding of Dynamic Signaling Features. PLoS Comput Biol. 2015 Oct; 11(10):e1004563. PMID: 26491963.
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    16. Gorky J, Schwaber J. The role of the gut-brain axis in alcohol use disorders. Prog Neuropsychopharmacol Biol Psychiatry. 2016 Feb 4; 65:234-41. PMID: 26188287.
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    17. DeCicco D, Zhu H, Brureau A, Schwaber JS, Vadigepalli R. MicroRNA network changes in the brain stem underlie the development of hypertension. Physiol Genomics. 2015 Sep; 47(9):388-99. PMID: 26126791.
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    18. Makadia HK, Anderson WD, Fey D, Sauter T, Schwaber JS, Vadigepalli R. Multiscale model of dynamic neuromodulation integrating neuropeptide-induced signaling pathway activity with membrane electrophysiology. Biophys J. 2015 Jan 6; 108(1):211-23. PMID: 25564868.
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    19. Park J, Ogunnaike B, Schwaber J, Vadigepalli R. Identifying functional gene regulatory network phenotypes underlying single cell transcriptional variability. Prog Biophys Mol Biol. 2015 Jan; 117(1):87-98. PMID: 25433230.
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    20. Park J, Brureau A, Kernan K, Starks A, Gulati S, Ogunnaike B, Schwaber J, Vadigepalli R. Inputs drive cell phenotype variability. Genome Res. 2014 Jun; 24(6):930-41. PMID: 24671852.
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    21. Freeman K, Staehle MM, Vadigepalli R, Gonye GE, Ogunnaike BA, Hoek JB, Schwaber JS. Coordinated dynamic gene expression changes in the central nucleus of the amygdala during alcohol withdrawal. Alcohol Clin Exp Res. 2013 Jan; 37 Suppl 1:E88-E100. PMID: 22827539.
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    22. Zhu H, Vadigepalli R, Rafferty R, Gonye GE, Weaver DR, Schwaber JS. Integrative gene regulatory network analysis reveals light-induced regional gene expression phase shift programs in the mouse suprachiasmatic nucleus. PLoS One. 2012; 7(5):e37833. PMID: 22662235.
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    23. Freeman K, Brureau A, Vadigepalli R, Staehle MM, Brureau MM, Gonye GE, Hoek JB, Hooper DC, Schwaber JS. Temporal changes in innate immune signals in a rat model of alcohol withdrawal in emotional and cardiorespiratory homeostatic nuclei. J Neuroinflammation. 2012; 9:97. PMID: 22626265.
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    24. Freeman K, Staehle MM, Gümüs ZH, Vadigepalli R, Gonye GE, Nichols CN, Ogunnaike BA, Hoek JB, Schwaber JS. Rapid temporal changes in the expression of a set of neuromodulatory genes during alcohol withdrawal in the dorsal vagal complex: molecular evidence of homeostatic disturbance. Alcohol Clin Exp Res. 2012 Oct; 36(10):1688-700. PMID: 22486438.
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    25. Morris KF, Schwaber JS. The neuroscience-systems biology disconnect: towards the NeuroPhysiome. Exp Physiol. 2012 Apr; 97(4):452-4. PMID: 22525662.
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    26. Vadigepalli R, Gonye GE, Paton JF, Schwaber JS. Adaptive transcriptional dynamics of A2 neurons and central cardiovascular control pathways. Exp Physiol. 2012 Apr; 97(4):462-8. PMID: 22002872.
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    27. Miller GM, Ogunnaike BA, Schwaber JS, Vadigepalli R. Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network. BMC Syst Biol. 2010; 4:171. PMID: 21167049.
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    28. Khan RL, Vadigepalli R, McDonald MK, Rogers RF, Gao GR, Schwaber JS. Dynamic transcriptomic response to acute hypertension in the nucleus tractus solitarius. Am J Physiol Regul Integr Comp Physiol. 2008 Jul; 295(1):R15-27. PMID: 18434436.
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    29. Hao H, Liu H, Gonye G, Schwaber JS. A fast carrier chromatin immunoprecipitation method applicable to microdissected tissue samples. J Neurosci Methods. 2008 Jul 15; 172(1):38-42. PMID: 18502516.
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    30. Gonye GE, Chakravarthula P, Schwaber JS, Vadigepalli R. From promoter analysis to transcriptional regulatory network prediction using PAINT. Methods Mol Biol. 2007; 408:49-68. PMID: 18314577.
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    31. Vadigepalli R, Hao H, Miller GM, Liu H, Schwaber JS. Epidermal growth factor receptor-induced circadian-time-dependent gene regulation in suprachiasmatic nucleus. Neuroreport. 2006 Sep 18; 17(13):1437-41. PMID: 16932154.
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    32. Khan RL, Gonye GE, Gao G, Schwaber JS. A universal reference sample derived from clone vector for improved detection of differential gene expression. BMC Genomics. 2006; 7:109. PMID: 16677381.
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    33. Hao H, Schwaber J. Epidermal growth factor receptor induced Erk phosphorylation in the suprachiasmatic nucleus. Brain Res. 2006 May 9; 1088(1):45-8. PMID: 16630586.
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    34. Zak DE, Hao H, Vadigepalli R, Miller GM, Ogunnaike BA, Schwaber JS. Systems analysis of circadian time-dependent neuronal epidermal growth factor receptor signaling. Genome Biol. 2006; 7(6):R48. PMID: 16784547.
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    35. Hao H, Zak DE, Sauter T, Schwaber J, Ogunnaike BA. Modeling the VPAC2-activated cAMP/PKA signaling pathway: from receptor to circadian clock gene induction. Biophys J. 2006 Mar 1; 90(5):1560-71. PMID: 16339878.
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    36. Covarrubias MY, Khan RL, Vadigepalli R, Hoek JB, Schwaber JS. Chronic alcohol exposure alters transcription broadly in a key integrative brain nucleus for homeostasis: the nucleus tractus solitarius. Physiol Genomics. 2005 Dec 14; 24(1):45-58. PMID: 16189278.
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    37. Zak DE, Gonye GE, Schwaber JS, Doyle FJ. Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network. Genome Res. 2003 Nov; 13(11):2396-405. PMID: 14597654.
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    38. Zak DE, Pearson RK, Vadigepalli R, Gonye GE, Schwaber JS, Doyle FJ. Continuous-time identification of gene expression models. OMICS. 2003; 7(4):373-86. PMID: 14683610.
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    39. Vadigepalli R, Chakravarthula P, Zak DE, Schwaber JS, Gonye GE. PAINT: a promoter analysis and interaction network generation tool for gene regulatory network identification. OMICS. 2003; 7(3):235-52. PMID: 14583114.
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