Thomas Jefferson University

Nestoras Karathanasis

TitleAssoc Prof CHP
InstitutionThomas Jefferson University
DepartmentNursing - Undergraduate
Address1020 Locust St.
Philadelphia PA 19107
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Karathanasis N, Hwang D, Heng V, Abhimannyu R, Slogoff-Sevilla P, Buchel G, Frisbie V, Li P, Kryoneriti D, Rigoutsos I. Reproducibility efforts as a teaching tool: A pilot study. PLoS Comput Biol. 2022 11; 18(11):e1010615. PMID: 36355750.
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    2. Planell N, Lagani V, Sebastian-Leon P, van der Kloet F, Ewing E, Karathanasis N, Urdangarin A, Arozarena I, Jagodic M, Tsamardinos I, Tarazona S, Conesa A, Tegner J, Gomez-Cabrero D. STATegra: Multi-Omics Data Integration - A Conceptual Scheme With a Bioinformatics Pipeline. Front Genet. 2021; 12:620453. PMID: 33747045.
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    3. Loher P, Karathanasis N. Machine Learning Approaches Identify Genes Containing Spatial Information From Single-Cell Transcriptomics Data. Front Genet. 2020; 11:612840. PMID: 33633771.
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    4. Loher P, Karathanasis N, Londin E, Bray P, Pliatsika V, Telonis AG, Rigoutsos I. IsoMiRmap-fast, deterministic, and exhaustive mining of isomiRs from short RNA-seq datasets. Bioinformatics. 2021 Jan 20. PMID: 33471076.
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    5. Tanevski J, Nguyen T, Truong B, Karaiskos N, Ahsen ME, Zhang X, Shu C, Xu K, Liang X, Hu Y, Pham HV, Xiaomei L, Le TD, Tarca AL, Bhatti G, Romero R, Karathanasis N, Loher P, Chen Y, Ouyang Z, Mao D, Zhang Y, Zand M, Ruan J, Hafemeister C, Qiu P, Tran D, Nguyen T, Gabor A, Yu T, Guinney J, Glaab E, Krause R, Banda P, Stolovitzky G, Rajewsky N, Saez-Rodriguez J, Meyer P. Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data. Life Sci Alliance. 2020 11; 3(11). PMID: 32972997.
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    6. Fernandes SJ, Morikawa H, Ewing E, Ruhrmann S, Joshi RN, Lagani V, Karathanasis N, Khademi M, Planell N, Schmidt A, Tsamardinos I, Olsson T, Piehl F, Kockum I, Jagodic M, Tegnér J, Gomez-Cabrero D. Non-parametric combination analysis of multiple data types enables detection of novel regulatory mechanisms in T cells of multiple sclerosis patients. Sci Rep. 2019 Aug 19; 9(1):11996. PMID: 31427643.
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    7. Ewing E, Kular L, Fernandes SJ, Karathanasis N, Lagani V, Ruhrmann S, Tsamardinos I, Tegner J, Piehl F, Gomez-Cabrero D, Jagodic M. Combining evidence from four immune cell types identifies DNA methylation patterns that implicate functionally distinct pathways during Multiple Sclerosis progression. EBioMedicine. 2019 May; 43:411-423. PMID: 31053557.
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    8. Karathanasis N, Tsamardinos I, Lagani V. omicsNPC: Applying the Non-Parametric Combination Methodology to the Integrative Analysis of Heterogeneous Omics Data. PLoS One. 2016; 11(11):e0165545. PMID: 27812137.
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    9. Karathanasis N, Tsamardinos I, Poirazi P. MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology. PLoS One. 2015; 10(5):e0126151. PMID: 25961860.
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    10. Oulas A, Karathanasis N, Louloupi A, Pavlopoulos GA, Poirazi P, Kalantidis K, Iliopoulos I. Prediction of miRNA targets. Methods Mol Biol. 2015; 1269:207-29. PMID: 25577381.
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    11. Ho VM, Dallalzadeh LO, Karathanasis N, Keles MF, Vangala S, Grogan T, Poirazi P, Martin KC. GluA2 mRNA distribution and regulation by miR-124 in hippocampal neurons. Mol Cell Neurosci. 2014 Jul; 61:1-12. PMID: 24784359.
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    12. Karathanasis N, Tsamardinos I, Poirazi P. Don't use a cannon to kill the ... miRNA mosquito. Bioinformatics. 2014 Apr 01; 30(7):1047-8. PMID: 24618472.
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    13. Oulas A, Karathanasis N, Louloupi A, Iliopoulos I, Kalantidis K, Poirazi P. A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2. RNA Biol. 2012 Sep; 9(9):1196-207. PMID: 22954617.
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    14. Oulas A, Karathanasis N, Louloupi A, Poirazi P. Finding cancer-associated miRNAs: methods and tools. Mol Biotechnol. 2011 Sep; 49(1):97-107. PMID: 21607762.
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    15. Oulas A, Karathanasis N, Poirazi P. Computational identification of miRNAs involved in cancer. Methods Mol Biol. 2011; 676:23-41. PMID: 20931387.
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