Thomas Jefferson University

Daniel Lipus

TitleAsst Professor
InstitutionPhiladelphia University
DepartmentUndergraduate Programs
Address3243 School House Lane
Philadelphia PA 19144
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Bartholom?us A, Mitzscherling J, Lipus D, Wagner D, Lavin P, Contreras R, Oses R. Complete genome sequence of Cellulomonas sp. strain ATA003. Microbiol Resour Announc. 2024 Jun 11; 13(6):e0103723. PMID: 38695562.
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    2. Horstmann L, Lipus D, Bartholom?us A, Arens F, Airo A, Ganzert L, Zamorano P, Schulze-Makuch D, Wagner D. Persistent microbial communities in hyperarid subsurface habitats of the Atacama Desert: Insights from intracellular DNA analysis. PNAS Nexus. 2024 Apr; 3(4):pgae123. PMID: 38655503.
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    3. Jia Z, Lipus D, Burckhardt O, Bussert R, Sondermann M, Bartholom?us A, Wagner D, Kallmeyer J. Enrichment of rare methanogenic Archaea shows their important ecological role in natural high-CO2 terrestrial subsurface environments. Front Microbiol. 2023; 14:1105259. PMID: 37293225.
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    4. Oses Pedraza R, Mitzscherling J, Lipus D, Wagner D, Bartholom?us A. Genome Sequence of Arthrobacter sp. Strain ATA002, a Seed Endophytic Bacterium from the Atacama Desert. Microbiol Resour Announc. 2023 May 17; 12(5):e0002723. PMID: 37036357.
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    5. Ross DE, Lipus D, Gulliver D. Predominance of Methanomicrobiales and diverse hydrocarbon-degrading taxa in the Appalachian coalbed biosphere revealed through metagenomics and genome-resolved metabolisms. Environ Microbiol. 2022 12; 24(12):5984-5997. PMID: 36251278.
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    6. Jia Z, Lipus D, Bartholom?us A, Burckhardt O, Sondermann M, Wagner D, Kallmeyer J. Metagenome-Assembled Genome of a Putative Methanogenic Methanosarcina sp. Strain Enriched from Terrestrial High-CO2 Subsurface Sediments. Microbiol Resour Announc. 2022 Dec 15; 11(12):e0103922. PMID: 36321905.
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    7. Lipus D, Jia Z, Bartholom?us A, Burckhardt O, Sondermann M, Wagner D, Kallmeyer J. Circular Metagenome-Assembled Genome of Methanobacterium sp. Strain ERen5, a Putative Methanogenic, H2-Utilizing Terrestrial Subsurface Archaeon. Microbiol Resour Announc. 2022 Oct 20; 11(10):e0067622. PMID: 36066261.
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    8. Bartholom?us A, Mitzscherling J, Lipus D, MacLean J, Wagner D. Draft Genome Sequence of Paenalcaligenes niemegkensis NGK35T, Isolated from Plastic-Polluted Soil of an Abandoned Landfill. Microbiol Resour Announc. 2022 Oct 20; 11(10):e0067122. PMID: 36043866.
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    9. Bartholom?us A, Lipus D, Mitzscherling J, MacLean J, Wagner D. Draft Genome Sequence of Nocardioides alcanivorans NGK65T, a Hexadecane-Degrading Bacterium. Microbiol Resour Announc. 2022 Aug 18; 11(8):e0121321. PMID: 35862914.
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    10. Tinker K, Lipus D, Gardiner J, Stuckman M, Gulliver D. The Microbial Community and Functional Potential in the Midland Basin Reveal a Community Dominated by Both Thiosulfate and Sulfate-Reducing Microorganisms. Microbiol Spectr. 2022 08 31; 10(4):e0004922. PMID: 35695567.
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    11. Mitzscherling J, MacLean J, Lipus D, Bartholom?us A, Mangelsdorf K, Lipski A, Roddatis V, Liebner S, Wagner D. Nocardioides alcanivorans sp. nov., a novel hexadecane-degrading species isolated from plastic waste. Int J Syst Evol Microbiol. 2022 Apr; 72(4). PMID: 35482521.
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    12. Mitzscherling J, MacLean J, Lipus D, Bartholom?us A, Mangelsdorf K, Lipski A, Roddatis V, Liebner S, Wagner D. Paenalcaligenes niemegkensis sp. nov., a novel species of the family Alcaligenaceae isolated from plastic waste. Int J Syst Evol Microbiol. 2022 Apr; 71(4). PMID: 35467502.
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    13. Schulze-Makuch D, Lipus D, Arens FL, Baqu? M, Bornemann TLV, de Vera JP, Flury M, Fr?sler J, Heinz J, Hwang Y, Kounaves SP, Mangelsdorf K, Meckenstock RU, Pannekens M, Probst AJ, S?enz JS, Schirmack J, Schloter M, Schmitt-Kopplin P, Schneider B, Uhl J, Vestergaard G, Valenzuela B, Zamorano P, Wagner D. Microbial Hotspots in Lithic Microhabitats Inferred from DNA Fractionation and Metagenomics in the Atacama Desert. Microorganisms. 2021 May 12; 9(5). PMID: 34065975.
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    14. Liu Q, Adler K, Lipus D, K?mpf H, Bussert R, Plessen B, Schulz HM, Krauze P, Horn F, Wagner D, Mangelsdorf K, Alawi M. Microbial Signatures in Deep CO2-Saturated Miocene Sediments of the Active Hartou?ov Mofette System (NW Czech Republic). Front Microbiol. 2020; 11:543260. PMID: 33381087.
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    15. Tinker K, Gardiner J, Lipus D, Sarkar P, Stuckman M, Gulliver D. Geochemistry and Microbiology Predict Environmental Niches With Conditions Favoring Potential Microbial Activity in the Bakken Shale. Front Microbiol. 2020; 11:1781. PMID: 32849400.
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    16. Lipus D, Vikram A, Gulliver D, Bibby K. Upregulation of peroxide scavenging enzymes and multidrug efflux proteins highlight an active sodium hypochlorite response in Pseudomonas fluorescens biofilms. Biofouling. 2019 03; 35(3):329-339. PMID: 31066290.
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    17. Akyon B, Lipus D, Bibby K. Glutaraldehyde inhibits biological treatment of organic additives in hydraulic fracturing produced water. Sci Total Environ. 2019 May 20; 666:1161-1168. PMID: 30970481.
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    18. Gulliver D, Lipus D, Ross D, Bibby K. Insights into microbial community structure and function from a shallow, simulated CO2 -leakage aquifer demonstrate microbial selection and adaptation. Environ Microbiol Rep. 2019 06; 11(3):338-351. PMID: 29984552.
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    19. Lipus D, Roy D, Khan E, Ross D, Vikram A, Gulliver D, Hammack R, Bibby K. Microbial communities in Bakken region produced water. FEMS Microbiol Lett. 2018 06 01; 365(12). PMID: 29688457.
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    20. Lipus D, Vikram A, Ross D, Bain D, Gulliver D, Hammack R, Bibby K. Predominance and Metabolic Potential of Halanaerobium spp. in Produced Water from Hydraulically Fractured Marcellus Shale Wells. Appl Environ Microbiol. 2017 04 15; 83(8). PMID: 28159795.
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    21. Lipus D, Ross D, Bibby K, Gulliver D. Draft Genome Sequence of Pseudomonas sp. BDAL1 Reconstructed from a Bakken Shale Hydraulic Fracturing-Produced Water Storage Tank Metagenome. Genome Announc. 2017 Mar 16; 5(11). PMID: 28302780.
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    22. Lipus D, Vikram A, Ross DE, Bibby K. Draft Genome Sequence of Methanohalophilus mahii Strain DAL1 Reconstructed from a Hydraulic Fracturing-Produced Water Metagenome. Genome Announc. 2016 Sep 01; 4(5). PMID: 27587817.
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    23. Vikram A, Lipus D, Bibby K. Metatranscriptome analysis of active microbial communities in produced water samples from the Marcellus Shale. Microb Ecol. 2016 10; 72(3):571-81. PMID: 27457653.
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    24. Mohan AM, Bibby KJ, Lipus D, Hammack RW, Gregory KB. The functional potential of microbial communities in hydraulic fracturing source water and produced water from natural gas extraction characterized by metagenomic sequencing. PLoS One. 2014; 9(10):e107682. PMID: 25338024.
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    25. Vikram A, Lipus D, Bibby K. Produced water exposure alters bacterial response to biocides. Environ Sci Technol. 2014 Nov 04; 48(21):13001-9. PMID: 25279933.
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