Thomas Jefferson University

Babatunde A Ogunnaike

TitleAssoc Prof CHP
InstitutionThomas Jefferson University
DepartmentNursing - Undergraduate
Address127 The Green
Newark DE 19716
Phone302-831-4504
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    TitleAssoc Prof CHP
    InstitutionThomas Jefferson University
    DepartmentNursing - Undergraduate

    TitleAssoc Prof CHP
    InstitutionThomas Jefferson University
    DepartmentNursing - Undergraduate


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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Chung SW, Cooper CR, Farach-Carson MC, Ogunnaike BA. Computational Modeling and Analysis of the TGF-?-induced ERK and SMAD Pathways. bioRxiv. 2024 Nov 09. PMID: 39574616.
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    2. Kurian V, Ghadipasha N, Gee M, Chalant A, Hamill T, Okossi A, Chen L, Yu B, Ogunnaike BA, Beris AN. Systems Engineering Approach to Modeling and Analysis of Chronic Obstructive Pulmonary Disease. ACS Omega. 2023 Jun 13; 8(23):20524-20535. PMID: 37332794.
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    3. Cook D, Manchel A, Ogunnaike BA, Vadigepalli R. Elucidating the Mechanisms of Dynamic and Robust Control of the Liver Homeostatic Renewal Process: Cell Network Modeling and Analysis. Ind Eng Chem Res. 2023 Feb 08; 62(5):2275-2287. PMID: 36787103.
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    4. Gee MM, Lenhoff AM, Schwaber JS, Ogunnaike BA, Vadigepalli R. Closed-loop modeling of central and intrinsic cardiac nervous system circuits underlying cardiovascular control. AIChE J. 2023 Apr; 69(4). PMID: 37250861.
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    5. Wiley KL, Sutherland BP, Ogunnaike BA, Kloxin AM. Rational Design of Hydrogel Networks with Dynamic Mechanical Properties to Mimic Matrix Remodeling. Adv Healthc Mater. 2021 Dec 22; e2101947. PMID: 34936227.
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    6. Verma A, Manchel A, Narayanan R, Hoek JB, Ogunnaike BA, Vadigepalli R. A Spatial Model of Hepatic Calcium Signaling and Glucose Metabolism Under Autonomic Control Reveals Functional Consequences of Varying Liver Innervation Patterns Across Species. Front Physiol. 2021; 12:748962. PMID: 34899380.
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    7. Afolabi BB, Babah OA, Adeyemo TA, Odukoya OO, Ezeaka CV, Nwaiwu O, Oshodi YA, Ogunnaike BA. Low-dose aspirin for preventing intrauterine growth restriction and pre-eclampsia in sickle cell pregnancy (PIPSICKLE): a randomised controlled trial (study protocol). BMJ Open. 2021 08 13; 11(8):e047949. PMID: 34389570.
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    8. Ogunnaike B, Banga JR, Bogle D, Parker R. Editorial: Biological Control Systems and Disease Modeling. Front Bioeng Biotechnol. 2021; 9:677976. PMID: 33898411.
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    9. Luo Y, Lovelett RJ, Price JV, Radhakrishnan D, Barnthouse K, Hu P, Schaefer E, Cunningham J, Lee KH, Shivappa RB, Ogunnaike BA. Modeling the Effect of Amino Acids and Copper on Monoclonal Antibody Productivity and Glycosylation: A Modular Approach. Biotechnol J. 2020 Sep 01; e2000261. PMID: 32875683.
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    10. Wells E, Song L, Greer M, Luo Y, Kurian V, Ogunnaike B, Robinson AS. Media supplementation for targeted manipulation of monoclonal antibody galactosylation and fucosylation. Biotechnol Bioeng. 2020 Jul 14. PMID: 32662879.
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    11. Zhang Q, Shan KS, Ogunnaike BA, Amewuame-Kpehor A, Nace T. An Exceedingly Rare Presentation of Severe Folate Deficiency-Induced Non-Immune Hemolytic Anemia. Cureus. 2020 Jun 11; 12(6):e8570. PMID: 32670706.
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    12. Park JH, Gorky J, Ogunnaike B, Vadigepalli R, Schwaber JS. Investigating the Effects of Brainstem Neuronal Adaptation on Cardiovascular Homeostasis. Front Neurosci. 2020; 14:470. PMID: 32508573.
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    13. Staehle MM, O'Sullivan S, Vadigepalli R, Kernan KF, Gonye GE, Ogunnaike BA, Schwaber JS. Diurnal Patterns of Gene Expression in the Dorsal Vagal Complex and the Central Nucleus of the Amygdala - Non-rhythm-generating Brain Regions. Front Neurosci. 2020; 14:375. PMID: 32477043.
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    14. Harding AJ, Kuba AG, McCandless BE, Das UK, Dobson KD, Ogunnaike BA, Shafarman WN. The growth of methylammonium lead iodide perovskites by close space vapor transport. RSC Adv. 2020 Apr 21; 10(27):16125-16131. PMID: 35493662.
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    15. McIlvain G, Ganji E, Cooper C, Killian ML, Ogunnaike BA, Johnson CL. Reliable preparation of agarose phantoms for use in quantitative magnetic resonance elastography. J Mech Behav Biomed Mater. 2019 Sep; 97:65-73. PMID: 31100487.
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    16. Verma A, Antony AN, Ogunnaike BA, Hoek JB, Vadigepalli R. Causality Analysis and Cell Network Modeling of Spatial Calcium Signaling Patterns in Liver Lobules. Front Physiol. 2018; 9:1377. PMID: 30337879.
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    17. Cook D, Achanta S, Hoek JB, Ogunnaike BA, Vadigepalli R. Cellular network modeling and single cell gene expression analysis reveals novel hepatic stellate cell phenotypes controlling liver regeneration dynamics. BMC Syst Biol. 2018 Oct 03; 12(1):86. PMID: 30285726.
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    18. Radhakrishnan D, Robinson AS, Ogunnaike BA. Controlling the Glycosylation Profile in mAbs Using Time-Dependent Media Supplementation. Antibodies (Basel). 2017 Dec 21; 7(1). PMID: 31544854.
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    19. Park J, Zhu H, O'Sullivan S, Ogunnaike BA, Weaver DR, Schwaber JS, Vadigepalli R. Single-Cell Transcriptional Analysis Reveals Novel Neuronal Phenotypes and Interaction Networks Involved in the Central Circadian Clock. Front Neurosci. 2016; 10:481. PMID: 27826225.
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    20. St Amand MM, Hayes J, Radhakrishnan D, Fernandez J, Meyer B, Robinson AS, Ogunnaike BA. Identifying a robust design space for glycosylation during monoclonal antibody production. Biotechnol Prog. 2016 Sep; 32(5):1149-1162. PMID: 27273898.
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    21. Verma A, Makadia H, Hoek JB, Ogunnaike BA, Vadigepalli R. Computational Modeling of Spatiotemporal Ca(2+) Signal Propagation Along Hepatocyte Cords. IEEE Trans Biomed Eng. 2016 Oct; 63(10):2047-55. PMID: 27076052.
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    22. Cook D, Ogunnaike BA, Vadigepalli R. Systems analysis of non-parenchymal cell modulation of liver repair across multiple regeneration modes. BMC Syst Biol. 2015; 9(1):71. PMID: 26493454.
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    23. Correnti JM, Cook D, Aksamitiene E, Swarup A, Ogunnaike B, Vadigepalli R, Hoek JB. Adiponectin fine-tuning of liver regeneration dynamics revealed through cellular network modelling. J Physiol. 2015 Jan 15; 593(2):365-83. PMID: 25630259.
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    24. Park J, Ogunnaike B, Schwaber J, Vadigepalli R. Identifying functional gene regulatory network phenotypes underlying single cell transcriptional variability. Prog Biophys Mol Biol. 2015 Jan; 117(1):87-98. PMID: 25433230.
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    25. St Amand MM, Radhakrishnan D, Robinson AS, Ogunnaike BA. Identification of manipulated variables for a glycosylation control strategy. Biotechnol Bioeng. 2014 Oct; 111(10):1957-70. PMID: 24728980.
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    26. Christie CR, Achenie LE, Ogunnaike BA. A control engineering model of calcium regulation. J Clin Endocrinol Metab. 2014 Aug; 99(8):2844-53. PMID: 24731009.
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    27. Park J, Brureau A, Kernan K, Starks A, Gulati S, Ogunnaike B, Schwaber J, Vadigepalli R. Inputs drive cell phenotype variability. Genome Res. 2014 Jun; 24(6):930-41. PMID: 24671852.
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    28. St Amand MM, Tran K, Radhakrishnan D, Robinson AS, Ogunnaike BA. Controllability analysis of protein glycosylation in cho cells. PLoS One. 2014; 9(2):e87973. PMID: 24498415.
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    29. St Amand MM, Ogunnaike BA, Robinson AS. Development of at-line assay to monitor charge variants of MAbs during production. Biotechnol Prog. 2014 Jan; 30(1):249-55. PMID: 24382831.
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    30. Welf ES, Naik UP, Ogunnaike BA. A spatial model for integrin clustering as a result of feedback between integrin activation and integrin binding. Biophys J. 2012 Sep 19; 103(6):1379-89. PMID: 22995511.
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    31. Birtwistle MR, Rauch J, Kiyatkin A, Aksamitiene E, Dobrzynski M, Hoek JB, Kolch W, Ogunnaike BA, Kholodenko BN. Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise. BMC Syst Biol. 2012; 6:109. PMID: 22920937.
      Citations:    
    32. Freeman K, Staehle MM, Vadigepalli R, Gonye GE, Ogunnaike BA, Hoek JB, Schwaber JS. Coordinated dynamic gene expression changes in the central nucleus of the amygdala during alcohol withdrawal. Alcohol Clin Exp Res. 2013 Jan; 37 Suppl 1:E88-E100. PMID: 22827539.
      Citations:    
    33. Freeman K, Staehle MM, Gümüs ZH, Vadigepalli R, Gonye GE, Nichols CN, Ogunnaike BA, Hoek JB, Schwaber JS. Rapid temporal changes in the expression of a set of neuromodulatory genes during alcohol withdrawal in the dorsal vagal complex: molecular evidence of homeostatic disturbance. Alcohol Clin Exp Res. 2012 Oct; 36(10):1688-700. PMID: 22486438.
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    34. Chung SW, Cooper CR, Farach-Carson MC, Ogunnaike BA. A control engineering approach to understanding the TGF-ß paradox in cancer. J R Soc Interface. 2012 Jun 7; 9(71):1389-97. PMID: 22188767.
      Citations:    
    35. Welf ES, Naik UP, Ogunnaike BA. Probabilistic modeling and analysis of the effects of extra-cellular matrix density on the sizes, shapes, and locations of integrin clusters in adherent cells. BMC Biophys. 2011; 4:15. PMID: 21827670.
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    36. Miller GM, Ogunnaike BA, Schwaber JS, Vadigepalli R. Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network. BMC Syst Biol. 2010; 4:171. PMID: 21167049.
      Citations:    
    37. Nakakuki T, Birtwistle MR, Saeki Y, Yumoto N, Ide K, Nagashima T, Brusch L, Ogunnaike BA, Okada-Hatakeyama M, Kholodenko BN. Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics. Cell. 2010 May 28; 141(5):884-96. PMID: 20493519.
      Citations:    
    38. Ogunnaike BA, Gelmi CA, Edwards JS. A probabilistic framework for microarray data analysis: fundamental probability models and statistical inference. J Theor Biol. 2010 May 21; 264(2):211-22. PMID: 20170665.
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    39. Li Y, Ogunnaike BA, Roberts CJ. Multi-variate approach to global protein aggregation behavior and kinetics: effects of pH, NaCl, and temperature for alpha-chymotrypsinogen A. J Pharm Sci. 2010 Feb; 99(2):645-62. PMID: 19653264.
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    40. Welf ES, Ogunnaike BA, Naik UP. Quantitative statistical description of integrin clusters in adherent cells. IET Syst Biol. 2009 Sep; 3(5):307-16. PMID: 21028922.
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    41. Chung SW, Miles FL, Sikes RA, Cooper CR, Farach-Carson MC, Ogunnaike BA. Quantitative modeling and analysis of the transforming growth factor beta signaling pathway. Biophys J. 2009 Mar 4; 96(5):1733-50. PMID: 19254534.
      Citations:    
    42. Birtwistle MR, Hatakeyama M, Yumoto N, Ogunnaike BA, Hoek JB, Kholodenko BN. Ligand-dependent responses of the ErbB signaling network: experimental and modeling analyses. Mol Syst Biol. 2007; 3:144. PMID: 18004277.
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    43. Tendulkar AV, Ogunnaike B, Wangikar PP. Protein local conformations arise from a mixture of Gaussian distributions. J Biosci. 2007 Aug; 32(5):899-908. PMID: 17914232.
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    44. Samant A, Ogunnaike BA, Vlachos DG. A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks. BMC Bioinformatics. 2007; 8:175. PMID: 17524148.
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    45. Yalamanchili N, Zak DE, Ogunnaike BA, Schwaber JS, Kriete A, Kholodenko BN. Quantifying gene network connectivity in silico: scalability and accuracy of a modular approach. Syst Biol (Stevenage). 2006 Jul; 153(4):236-46. PMID: 16986625.
      Citations:    
    46. Ogunnaike BA. Elucidating the digital control mechanism for DNA damage repair with the p53-Mdm2 system: single cell data analysis and ensemble modelling. J R Soc Interface. 2006 Feb 22; 3(6):175-84. PMID: 16849229.
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    47. Kauffman KJ, Ogunnaike BA, Edwards JS. Designing experiments that aid in the identification of regulatory networks. Brief Funct Genomic Proteomic. 2006 Feb; 4(4):331-42. PMID: 17202124.
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    48. Zak DE, Hao H, Vadigepalli R, Miller GM, Ogunnaike BA, Schwaber JS. Systems analysis of circadian time-dependent neuronal epidermal growth factor receptor signaling. Genome Biol. 2006; 7(6):R48. PMID: 16784547.
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    49. Hao H, Zak DE, Sauter T, Schwaber J, Ogunnaike BA. Modeling the VPAC2-activated cAMP/PKA signaling pathway: from receptor to circadian clock gene induction. Biophys J. 2006 Mar 1; 90(5):1560-71. PMID: 16339878.
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    50. Merritt J, Butz JA, Ogunnaike BA, Edwards JS. Parallel analysis of mutant human glucose 6-phosphate dehydrogenase in yeast using PCR colonies. Biotechnol Bioeng. 2005 Dec 5; 92(5):519-31. PMID: 16193512.
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    51. Mikkilineni V, Mitra RD, Merritt J, DiTonno JR, Church GM, Ogunnaike B, Edwards JS. Digital quantitative measurements of gene expression. Biotechnol Bioeng. 2004 Apr 20; 86(2):117-24. PMID: 15052631.
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