Thomas Jefferson University

Candice Hirsch

TitleVolunteer Faculty
InstitutionAbington Memorial Hospital
DepartmentNursing Continuing Education - Abington Memorial Hospital
Address120 Medical Campus Drive
Lansdale PA 19446
Phone2154814325
vCardDownload vCard

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Catlin NS, Agha HI, Platts AE, Munasinghe M, Hirsch CN, Josephs EB. Structural Variants Contribute to Phenotypic Variation in Maize. Mol Ecol. 2025 Dec; 34(24):e17662. PMID: 39945381.
      Citations:    
    2. Ellison EL, Zhou P, Chu YH, Hermanson P, Gomez-Cano L, Myers ZA, Abnave A, Gray J, Hirsch CN, Grotewold E, Springer NM. Transcriptome profiling of maize transcription factor mutants to probe gene regulatory network predictions. G3 (Bethesda). 2025 01 08; 15(1). PMID: 39566186.
      Citations:    
    3. Catlin NS, Agha HI, Platts AE, Munasinghe M, Hirsch CN, Josephs EB. Structural variants contribute to phenotypic variation in maize. bioRxiv. 2024 Dec 03. PMID: 38948717.
      Citations:    
    4. Sweet DD, Tirado SB, Cooper J, Springer NM, Hirsch CD, Hirsch CN. Temporally resolved growth patterns reveal novel information about the polygenic nature of complex quantitative traits. Plant J. 2024 Dec; 120(5):1969-1986. PMID: 39462452.
      Citations:    
    5. Ou S, Scheben A, Collins T, Qiu Y, Seetharam AS, Menard CC, Manchanda N, Gent JI, Schatz MC, Anderson SN, Hufford MB, Hirsch CN. Differences in activity and stability drive transposable element variation in tropical and temperate maize. Genome Res. 2024 09 20; 34(8):1140-1153. PMID: 39251347.
      Citations:    
    6. Ou S, Jiang N, Hirsch CN, Hufford MB. Response to Commentary: Accounting for diverse transposable element landscapes is key to developing and evaluating accurate de novo annotation strategies. Genome Biol. 2024 01 02; 25(1):6. PMID: 38169403.
      Citations:    
    7. Schoemaker DL, Qiu Y, de Leon N, Hirsch CN, Kaeppler SM. Genetic analysis of pericarp pigmentation variation in Corn Belt dent maize. G3 (Bethesda). 2023 12 29; 14(1). PMID: 37950891.
      Citations:    
    8. Munasinghe M, Read A, Stitzer MC, Song B, Menard CC, Ma KY, Brandvain Y, Hirsch CN, Springer N. Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion. PLoS Genet. 2023 12; 19(12):e1011086. PMID: 38134220.
      Citations:    
    9. Barreto Ortiz J, Hirsch CN, Ehlke NJ, Watkins E. SpykProps: an imaging pipeline to quantify architecture in unilateral grass inflorescences. Plant Methods. 2023 Nov 13; 19(1):125. PMID: 37957737.
      Citations:    
    10. Ellison EL, Zhou P, Hermanson P, Chu YH, Read A, Hirsch CN, Grotewold E, Springer NM. Mutator transposon insertions within maize genes often provide a novel outward reading promoter. Genetics. 2023 11 01; 225(3). PMID: 37815810.
      Citations:    
    11. Della Coletta R, Fernandes SB, Monnahan PJ, Mikel MA, Bohn MO, Lipka AE, Hirsch CN. Importance of genetic architecture in marker selection decisions for genomic prediction. Theor Appl Genet. 2023 Oct 11; 136(11):220. PMID: 37819415.
      Citations:    
    12. Lima DC, Aviles AC, Alpers RT, Perkins A, Schoemaker DL, Costa M, Michel KJ, Kaeppler S, Ertl D, Romay MC, Gage JL, Holland J, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Gore MA, Hirsch CN, Knoll JE, McKay J, Minyo R, Murray SC, Schnable J, Sekhon RS, Singh MP, Sparks EE, Thomison P, Thompson A, Tuinstra M, Wallace J, Washburn JD, Weldekidan T, Xu W, de Leon N. 2020-2021 field seasons of Maize GxE project within the Genomes to Fields Initiative. BMC Res Notes. 2023 Sep 14; 16(1):219. PMID: 37710302.
      Citations:    
    13. Della Coletta R, Liese SE, Fernandes SB, Mikel MA, Bohn MO, Lipka AE, Hirsch CN. Linking genetic and environmental factors through marker effect networks to understand trait plasticity. Genetics. 2023 08 09; 224(4). PMID: 37246567.
      Citations:    
    14. Lima DC, Washburn JD, Varela JI, Chen Q, Gage JL, Romay MC, Holland J, Ertl D, Lopez-Cruz M, Aguate FM, de Los Campos G, Kaeppler S, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Gore MA, Hirsch CN, Knoll JE, McKay J, Minyo R, Murray SC, Ortez OA, Schnable JC, Sekhon RS, Singh MP, Sparks EE, Thompson A, Tuinstra M, Wallace J, Weldekidan T, Xu W, de Leon N. Genomes to Fields 2022 Maize genotype by Environment Prediction Competition. BMC Res Notes. 2023 Jul 17; 16(1):148. PMID: 37461058.
      Citations:    
    15. Lima DC, Aviles AC, Alpers RT, McFarland BA, Kaeppler S, Ertl D, Romay MC, Gage JL, Holland J, Beissinger T, Bohn M, Buckler E, Edwards J, Flint-Garcia S, Hirsch CN, Hood E, Hooker DC, Knoll JE, Kolkman JM, Liu S, McKay J, Minyo R, Moreta DE, Murray SC, Nelson R, Schnable JC, Sekhon RS, Singh MP, Thomison P, Thompson A, Tuinstra M, Wallace J, Washburn JD, Weldekidan T, Wisser RJ, Xu W, de Leon N. 2018-2019 field seasons of the Maize Genomes to Fields (G2F) G x E project. BMC Genom Data. 2023 05 25; 24(1):29. PMID: 37231352.
      Citations:    
    16. Kick DR, Wallace JG, Schnable JC, Kolkman JM, Alaca B, Beissinger TM, Edwards J, Ertl D, Flint-Garcia S, Gage JL, Hirsch CN, Knoll JE, de Leon N, Lima DC, Moreta DE, Singh MP, Thompson A, Weldekidan T, Washburn JD. Yield prediction through integration of genetic, environment, and management data through deep learning. G3 (Bethesda). 2023 04 11; 13(4). PMID: 36625555.
      Citations:    
    17. Read A, Weiss T, Crisp PA, Liang Z, Noshay J, Menard CC, Wang C, Song M, Hirsch CN, Springer NM, Zhang F. Genome-wide loss of CHH methylation with limited transcriptome changes in Setaria viridis DOMAINS REARRANGED METHYLTRANSFERASE (DRM) mutants. Plant J. 2022 07; 111(1):103-116. PMID: 35436373.
      Citations:    
    18. Ou S, Su W, Liao Y, Chougule K, Agda JRA, Hellinga AJ, Lugo CSB, Elliott TA, Ware D, Peterson T, Jiang N, Hirsch CN, Hufford MB. Author Correction: Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline. Genome Biol. 2022 Mar 08; 23(1):76. PMID: 35260190.
      Citations:    
    19. Li Z, Tirado SB, Kadam DC, Coffey L, Miller ND, Spalding EP, Lorenz AJ, de Leon N, Kaeppler SM, Schnable PS, Springer NM, Hirsch CN. Correction to: Characterizing introgression-by-environment interactions using maize near isogenic lines. Theor Appl Genet. 2021 Dec; 134(12):4077. PMID: 34668979.
      Citations:    
    20. Qiu Y, O'Connor CH, Della Coletta R, Renk JS, Monnahan PJ, Noshay JM, Liang Z, Gilbert A, Anderson SN, McGaugh SE, Springer NM, Hirsch CN. Whole-genome variation of transposable element insertions in a maize diversity panel. G3 (Bethesda). 2021 09 27; 11(10). PMID: 34568911.
      Citations:    
    21. Haas M, Kono T, Macchietto M, Millas R, McGilp L, Shao M, Duquette J, Qiu Y, Hirsch CN, Kimball J. Whole-genome assembly and annotation of northern wild rice, Zizania palustris L., supports a whole-genome duplication in the Zizania genus. Plant J. 2021 09; 107(6):1802-1818. PMID: 34310794.
      Citations:    
    22. Noshay JM, Liang Z, Zhou P, Crisp PA, Marand AP, Hirsch CN, Schmitz RJ, Springer NM. Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes. G3 (Bethesda). 2021 08 07; 11(8). PMID: 34849810.
      Citations:    
    23. Hufford MB, Seetharam AS, Woodhouse MR, Chougule KM, Ou S, Liu J, Ricci WA, Guo T, Olson A, Qiu Y, Della Coletta R, Tittes S, Hudson AI, Marand AP, Wei S, Lu Z, Wang B, Tello-Ruiz MK, Piri RD, Wang N, Kim DW, Zeng Y, O'Connor CH, Li X, Gilbert AM, Baggs E, Krasileva KV, Portwood JL, Cannon EKS, Andorf CM, Manchanda N, Snodgrass SJ, Hufnagel DE, Jiang Q, Pedersen S, Syring ML, Kudrna DA, Llaca V, Fengler K, Schmitz RJ, Ross-Ibarra J, Yu J, Gent JI, Hirsch CN, Ware D, Dawe RK. De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes. Science. 2021 08 06; 373(6555):655-662. PMID: 34353948.
      Citations:    
    24. Burns MJ, Renk JS, Eickholt DP, Gilbert AM, Hattery TJ, Holmes M, Anderson N, Waters AJ, Kalambur S, Flint-Garcia SA, Yandeau-Nelson MD, Annor GA, Hirsch CN. Predicting moisture content during maize nixtamalization using machine learning with NIR spectroscopy. Theor Appl Genet. 2021 Nov; 134(11):3743-3757. PMID: 34345971.
      Citations:    
    25. Bornowski N, Michel KJ, Hamilton JP, Ou S, Seetharam AS, Jenkins J, Grimwood J, Plott C, Shu S, Talag J, Kennedy M, Hundley H, Singan VR, Barry K, Daum C, Yoshinaga Y, Schmutz J, Hirsch CN, Hufford MB, de Leon N, Kaeppler SM, Buell CR. Genomic variation within the maize stiff-stalk heterotic germplasm pool. Plant Genome. 2021 11; 14(3):e20114. PMID: 34275202.
      Citations:    
    26. Renk JS, Gilbert AM, Hattery TJ, O'Connor CH, Monnahan PJ, Anderson N, Waters AJ, Eickholt DP, Flint-Garcia SA, Yandeau-Nelson MD, Hirsch CN. Genetic control of kernel compositional variation in a maize diversity panel. Plant Genome. 2021 11; 14(3):e20115. PMID: 34197039.
      Citations:    
    27. Jarquin D, de Leon N, Romay C, Bohn M, Buckler ES, Ciampitti I, Edwards J, Ertl D, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Holland JB, Hooker D, Kaeppler SM, Knoll J, Lee EC, Lawrence-Dill CJ, Lynch JP, Moose SP, Murray SC, Nelson R, Rocheford T, Schnable JC, Schnable PS, Smith M, Springer N, Thomison P, Tuinstra M, Wisser RJ, Xu W, Yu J, Lorenz A. Utility of Climatic Information via Combining Ability Models to Improve Genomic Prediction for Yield Within the Genomes to Fields Maize Project. Front Genet. 2020; 11:592769. PMID: 33763106.
      Citations:    
    28. Noshay JM, Marand AP, Anderson SN, Zhou P, Mejia Guerra MK, Lu Z, O'Connor CH, Crisp PA, Hirsch CN, Schmitz RJ, Springer NM. Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons. Genetics. 2021 03 03; 217(1):1-13. PMID: 33683350.
      Citations:    
    29. Rogers AR, Dunne JC, Romay C, Bohn M, Buckler ES, Ciampitti IA, Edwards J, Ertl D, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Hood E, Hooker DC, Knoll J, Lee EC, Lorenz A, Lynch JP, McKay J, Moose SP, Murray SC, Nelson R, Rocheford T, Schnable JC, Schnable PS, Sekhon R, Singh M, Smith M, Springer N, Thelen K, Thomison P, Thompson A, Tuinstra M, Wallace J, Wisser RJ, Xu W, Gilmour AR, Kaeppler SM, De Leon N, Holland JB. The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment. G3 (Bethesda). 2021 02 09; 11(2). PMID: 33585867.
      Citations:    
    30. Della Coletta R, Qiu Y, Ou S, Hufford MB, Hirsch CN. How the pan-genome is changing crop genomics and improvement. Genome Biol. 2021 01 04; 22(1):3. PMID: 33397434.
      Citations:    
    31. Li Z, Zhou P, Della Coletta R, Zhang T, Brohammer AB, H O'Connor C, Vaillancourt B, Lipzen A, Daum C, Barry K, de Leon N, Hirsch CD, Buell CR, Kaeppler SM, Springer NM, Hirsch CN. Single-parent expression drives dynamic gene expression complementation in maize hybrids. Plant J. 2021 01; 105(1):93-107. PMID: 33098691.
      Citations:    
    32. Li Z, Tirado SB, Kadam DC, Coffey L, Miller ND, Spalding EP, Lorenz AJ, de Leon N, Kaeppler SM, Schnable PS, Springer NM, Hirsch CN. Characterizing introgression-by-environment interactions using maize near isogenic lines. Theor Appl Genet. 2020 Oct; 133(10):2761-2773. PMID: 32572549.
      Citations:    
    33. Tirado SB, Hirsch CN, Springer NM. UAV-based imaging platform for monitoring maize growth throughout development. Plant Direct. 2020 Jun; 4(6):e00230. PMID: 32524060.
      Citations:    
    34. Liu J, Seetharam AS, Chougule K, Ou S, Swentowsky KW, Gent JI, Llaca V, Woodhouse MR, Manchanda N, Presting GG, Kudrna DA, Alabady M, Hirsch CN, Fengler KA, Ware D, Michael TP, Hufford MB, Dawe RK. Gapless assembly of maize chromosomes using long-read technologies. Genome Biol. 2020 05 20; 21(1):121. PMID: 32434565.
      Citations:    
    35. Ou S, Liu J, Chougule KM, Fungtammasan A, Seetharam AS, Stein JC, Llaca V, Manchanda N, Gilbert AM, Wei S, Chin CS, Hufnagel DE, Pedersen S, Snodgrass SJ, Fengler K, Woodhouse M, Walenz BP, Koren S, Phillippy AM, Hannigan BT, Dawe RK, Hirsch CN, Hufford MB, Ware D. Effect of sequence depth and length in long-read assembly of the maize inbred NC358. Nat Commun. 2020 05 08; 11(1):2288. PMID: 32385271.
      Citations:    
    36. Monnahan PJ, Michno JM, O'Connor C, Brohammer AB, Springer NM, McGaugh SE, Hirsch CN. Using multiple reference genomes to identify and resolve annotation inconsistencies. BMC Genomics. 2020 Apr 08; 21(1):281. PMID: 32264824.
      Citations:    
    37. Zhou P, Li Z, Magnusson E, Gomez Cano F, Crisp PA, Noshay JM, Grotewold E, Hirsch CN, Briggs SP, Springer NM. Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions. Plant Cell. 2020 05; 32(5):1377-1396. PMID: 32184350.
      Citations:    
    38. McFarland BA, AlKhalifah N, Bohn M, Bubert J, Buckler ES, Ciampitti I, Edwards J, Ertl D, Gage JL, Falcon CM, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Holland JB, Hood E, Hooker D, Jarquin D, Kaeppler SM, Knoll J, Kruger G, Lauter N, Lee EC, Lima DC, Lorenz A, Lynch JP, McKay J, Miller ND, Moose SP, Murray SC, Nelson R, Poudyal C, Rocheford T, Rodriguez O, Romay MC, Schnable JC, Schnable PS, Scully B, Sekhon R, Silverstein K, Singh M, Smith M, Spalding EP, Springer N, Thelen K, Thomison P, Tuinstra M, Wallace J, Walls R, Wills D, Wisser RJ, Xu W, Yeh CT, de Leon N. Maize genomes to fields (G2F): 2014-2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets. BMC Res Notes. 2020 Feb 12; 13(1):71. PMID: 32051026.
      Citations:    
    39. Ou S, Su W, Liao Y, Chougule K, Agda JRA, Hellinga AJ, Lugo CSB, Elliott TA, Ware D, Peterson T, Jiang N, Hirsch CN, Hufford MB. Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline. Genome Biol. 2019 12 16; 20(1):275. PMID: 31843001.
      Citations:    
    40. Singh A, Li G, Brohammer AB, Jarquin D, Hirsch CN, Alfano JR, Lorenz AJ. Genome-Wide Association and Gene Co-expression Network Analyses Reveal Complex Genetics of Resistance to Goss's Wilt of Maize. G3 (Bethesda). 2019 10 07; 9(10):3139-3152. PMID: 31362973.
      Citations:    
    41. Crisp PA, Hammond R, Zhou P, Vaillancourt B, Lipzen A, Daum C, Barry K, de Leon N, Buell CR, Kaeppler SM, Meyers BC, Hirsch CN, Springer NM. Variation and Inheritance of Small RNAs in Maize Inbreds and F1 Hybrids. Plant Physiol. 2020 01; 182(1):318-331. PMID: 31575624.
      Citations:    
    42. Zhang X, Mogel KJHV, Lor VS, Hirsch CN, De Vries B, Kaeppler HF, Tracy WF, Kaeppler SM. Maize sugary enhancer1 (se1) is a gene affecting endosperm starch metabolism. Proc Natl Acad Sci U S A. 2019 10 08; 116(41):20776-20785. PMID: 31548423.
      Citations:    
    43. Anderson SN, Stitzer MC, Brohammer AB, Zhou P, Noshay JM, O'Connor CH, Hirsch CD, Ross-Ibarra J, Hirsch CN, Springer NM. Transposable elements contribute to dynamic genome content in maize. Plant J. 2019 12; 100(5):1052-1065. PMID: 31381222.
      Citations:    
    44. Noshay JM, Anderson SN, Zhou P, Ji L, Ricci W, Lu Z, Stitzer MC, Crisp PA, Hirsch CN, Zhang X, Schmitz RJ, Springer NM. Monitoring the interplay between transposable element families and DNA methylation in maize. PLoS Genet. 2019 09; 15(9):e1008291. PMID: 31498837.
      Citations:    
    45. Li Z, Coffey L, Garfin J, Miller ND, White MR, Spalding EP, Leon N, Kaeppler SM, Schnable PS, Springer NM, Hirsch CN. Correction: Genotype-by-environment interactions affecting heterosis in maize. PLoS One. 2019; 14(8):e0219528. PMID: 31381609.
      Citations:    
    46. Hemshrot A, Poets AM, Tyagi P, Lei L, Carter CK, Hirsch CN, Li L, Brown-Guedira G, Morrell PL, Muehlbauer GJ, Smith KP. Development of a Multiparent Population for Genetic Mapping and Allele Discovery in Six-Row Barley. Genetics. 2019 10; 213(2):595-613. PMID: 31358533.
      Citations:    
    47. Della Coletta R, Hirsch CN, Rouse MN, Lorenz A, Garvin DF. Genomic Dissection of Nonhost Resistance to Wheat Stem Rust in Brachypodium distachyon. Mol Plant Microbe Interact. 2019 Apr; 32(4):392-400. PMID: 30261155.
      Citations:    
    48. Mazaheri M, Heckwolf M, Vaillancourt B, Gage JL, Burdo B, Heckwolf S, Barry K, Lipzen A, Ribeiro CB, Kono TJY, Kaeppler HF, Spalding EP, Hirsch CN, Robin Buell C, de Leon N, Kaeppler SM. Genome-wide association analysis of stalk biomass and anatomical traits in maize. BMC Plant Biol. 2019 Jan 31; 19(1):45. PMID: 30704393.
      Citations:    
    49. Zhou P, Hirsch CN, Briggs SP, Springer NM. Dynamic Patterns of Gene Expression Additivity and Regulatory Variation throughout Maize Development. Mol Plant. 2019 03 04; 12(3):410-425. PMID: 30593858.
      Citations:    
    50. Kono TJY, Brohammer AB, McGaugh SE, Hirsch CN. Tandem Duplicate Genes in Maize Are Abundant and Date to Two Distinct Periods of Time. G3 (Bethesda). 2018 08 30; 8(9):3049-3058. PMID: 30030405.
      Citations:    
    51. AlKhalifah N, Campbell DA, Falcon CM, Gardiner JM, Miller ND, Romay MC, Walls R, Walton R, Yeh CT, Bohn M, Bubert J, Buckler ES, Ciampitti I, Flint-Garcia S, Gore MA, Graham C, Hirsch C, Holland JB, Hooker D, Kaeppler S, Knoll J, Lauter N, Lee EC, Lorenz A, Lynch JP, Moose SP, Murray SC, Nelson R, Rocheford T, Rodriguez O, Schnable JC, Scully B, Smith M, Springer N, Thomison P, Tuinstra M, Wisser RJ, Xu W, Ertl D, Schnable PS, De Leon N, Spalding EP, Edwards J, Lawrence-Dill CJ. Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets. BMC Res Notes. 2018 Jul 09; 11(1):452. PMID: 29986751.
      Citations:    
    52. Salvo S, Cook J, Carlson AR, Hirsch CN, Kaeppler SM, Kaeppler HF. Genetic Fine-Mapping of a Quantitative Trait Locus (QTL) Associated with Embryogenic Tissue Culture Response and Plant Regeneration Ability in Maize (Zea mays L.). Plant Genome. 2018 07; 11(2). PMID: 30025019.
      Citations:    
    53. Hirsch CN, Springer NM. Weeding out bad alleles. Nat Plants. 2018 04; 4(4):193-194. PMID: 29556084.
      Citations:    
    54. Li Z, Coffey L, Garfin J, Miller ND, White MR, Spalding EP, de Leon N, Kaeppler SM, Schnable PS, Springer NM, Hirsch CN. Genotype-by-environment interactions affecting heterosis in maize. PLoS One. 2018; 13(1):e0191321. PMID: 29342221.
      Citations:    
    55. Brohammer AB, Kono TJY, Springer NM, McGaugh SE, Hirsch CN. The limited role of differential fractionation in genome content variation and function in maize (Zea mays L.) inbred lines. Plant J. 2018 Jan; 93(1):131-141. PMID: 29124819.
      Citations:    
    56. Gage JL, Jarquin D, Romay C, Lorenz A, Buckler ES, Kaeppler S, Alkhalifah N, Bohn M, Campbell DA, Edwards J, Ertl D, Flint-Garcia S, Gardiner J, Good B, Hirsch CN, Holland J, Hooker DC, Knoll J, Kolkman J, Kruger G, Lauter N, Lawrence-Dill CJ, Lee E, Lynch J, Murray SC, Nelson R, Petzoldt J, Rocheford T, Schnable J, Schnable PS, Scully B, Smith M, Springer NM, Srinivasan S, Walton R, Weldekidan T, Wisser RJ, Xu W, Yu J, de Leon N. The effect of artificial selection on phenotypic plasticity in maize. Nat Commun. 2017 11 07; 8(1):1348. PMID: 29116144.
      Citations:    
    57. Waters AJ, Makarevitch I, Noshay J, Burghardt LT, Hirsch CN, Hirsch CD, Springer NM. Natural variation for gene expression responses to abiotic stress in maize. Plant J. 2017 Feb; 89(4):706-717. PMID: 28188666.
      Citations:    
    58. Hirsch CN, Hirsch CD, Brohammer AB, Bowman MJ, Soifer I, Barad O, Shem-Tov D, Baruch K, Lu F, Hernandez AG, Fields CJ, Wright CL, Koehler K, Springer NM, Buckler E, Buell CR, de Leon N, Kaeppler SM, Childs KL, Mikel MA. Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize. Plant Cell. 2016 Nov; 28(11):2700-2714. PMID: 27803309.
      Citations:    
    59. Stelpflug SC, Sekhon RS, Vaillancourt B, Hirsch CN, Buell CR, de Leon N, Kaeppler SM. An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development. Plant Genome. 2016 03; 9(1). PMID: 27898762.
      Citations:    
    60. Zhang X, Hirsch CN, Sekhon RS, de Leon N, Kaeppler SM. Evidence for maternal control of seed size in maize from phenotypic and transcriptional analysis. J Exp Bot. 2016 Mar; 67(6):1907-17. PMID: 26826570.
      Citations:    
    61. Li Q, Gent JI, Zynda G, Song J, Makarevitch I, Hirsch CD, Hirsch CN, Dawe RK, Madzima TF, McGinnis KM, Lisch D, Schmitz RJ, Vaughn MW, Springer NM. RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome. Proc Natl Acad Sci U S A. 2015 Nov 24; 112(47):14728-33. PMID: 26553984.
      Citations:    
    62. Makarevitch I, Waters AJ, West PT, Stitzer M, Hirsch CN, Ross-Ibarra J, Springer NM. Correction: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress. PLoS Genet. 2015 Oct; 11(10):e1005566. PMID: 26452261.
      Citations:    
    63. Hirsch CD, Springer NM, Hirsch CN. Genomic limitations to RNA sequencing expression profiling. Plant J. 2015 Nov; 84(3):491-503. PMID: 26331235.
      Citations:    
    64. Haase NJ, Beissinger T, Hirsch CN, Vaillancourt B, Deshpande S, Barry K, Buell CR, Kaeppler SM, de Leon N. Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis. G3 (Bethesda). 2015 Jun 01; 5(8):1593-602. PMID: 26038364.
      Citations:    
    65. Makarevitch I, Waters AJ, West PT, Stitzer M, Hirsch CN, Ross-Ibarra J, Springer NM. Transposable elements contribute to activation of maize genes in response to abiotic stress. PLoS Genet. 2015 Jan; 11(1):e1004915. PMID: 25569788.
      Citations:    
    66. Salvo SA, Hirsch CN, Buell CR, Kaeppler SM, Kaeppler HF. Whole transcriptome profiling of maize during early somatic embryogenesis reveals altered expression of stress factors and embryogenesis-related genes. PLoS One. 2014; 9(10):e111407. PMID: 25356773.
      Citations:    
    67. Burton AL, Johnson JM, Foerster JM, Hirsch CN, Buell CR, Hanlon MT, Kaeppler SM, Brown KM, Lynch JP. QTL mapping and phenotypic variation for root architectural traits in maize (Zea mays L.). Theor Appl Genet. 2014 Nov; 127(11):2293-311. PMID: 25230896.
      Citations:    
    68. Hirsch CN, Flint-Garcia SA, Beissinger TM, Eichten SR, Deshpande S, Barry K, McMullen MD, Holland JB, Buckler ES, Springer N, Buell CR, de Leon N, Kaeppler SM. Insights into the effects of long-term artificial selection on seed size in maize. Genetics. 2014 Sep; 198(1):409-21. PMID: 25037958.
      Citations:    
    69. Sekhon RS, Hirsch CN, Childs KL, Breitzman MW, Kell P, Duvick S, Spalding EP, Buell CR, de Leon N, Kaeppler SM. Phenotypic and Transcriptional Analysis of Divergently Selected Maize Populations Reveals the Role of Developmental Timing in Seed Size Determination. Plant Physiol. 2014 Jun; 165(2):658-669. PMID: 24710068.
      Citations:    
    70. Hirsch CN, Foerster JM, Johnson JM, Sekhon RS, Muttoni G, Vaillancourt B, Pe?agaricano F, Lindquist E, Pedraza MA, Barry K, de Leon N, Kaeppler SM, Buell CR. Insights into the maize pan-genome and pan-transcriptome. Plant Cell. 2014 Jan; 26(1):121-35. PMID: 24488960.
      Citations:    
    71. Hirsch CD, Evans J, Buell CR, Hirsch CN. Reduced representation approaches to interrogate genome diversity in large repetitive plant genomes. Brief Funct Genomics. 2014 Jul; 13(4):257-67. PMID: 24395692.
      Citations:    
    72. Beissinger TM, Hirsch CN, Vaillancourt B, Deshpande S, Barry K, Buell CR, Kaeppler SM, Gianola D, de Leon N. A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number. Genetics. 2014 Mar; 196(3):829-40. PMID: 24381334.
      Citations:    
    73. Hirsch CN, Hirsch CD, Felcher K, Coombs J, Zarka D, Van Deynze A, De Jong W, Veilleux RE, Jansky S, Bethke P, Douches DS, Buell CR. Retrospective view of North American potato (Solanum tuberosum L.) breeding in the 20th and 21st centuries. G3 (Bethesda). 2013 Jun 21; 3(6):1003-13. PMID: 23589519.
      Citations:    
    74. Sekhon RS, Briskine R, Hirsch CN, Myers CL, Springer NM, Buell CR, de Leon N, Kaeppler SM. Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays. PLoS One. 2013; 8(4):e61005. PMID: 23637782.
      Citations:    
    75. Beissinger TM, Hirsch CN, Sekhon RS, Foerster JM, Johnson JM, Muttoni G, Vaillancourt B, Buell CR, Kaeppler SM, de Leon N. Marker density and read depth for genotyping populations using genotyping-by-sequencing. Genetics. 2013 Apr; 193(4):1073-81. PMID: 23410831.
      Citations:    
    76. Hirsch CN, Buell CR. Tapping the promise of genomics in species with complex, nonmodel genomes. Annu Rev Plant Biol. 2013; 64:89-110. PMID: 23451780.
      Citations:    
    77. Mayanja-Kizza H, Wu M, Aung H, Liu S, Luzze H, Hirsch C, Toossi Z. The interaction of monocyte chemoattractant protein-1 and tumour necrosis factor-alpha in Mycobacterium tuberculosis-induced HIV-1 replication at sites of active tuberculosis. Scand J Immunol. 2009 Jun; 69(6):516-20. PMID: 19439012.
      Citations:    
    78. Hertoghe T, Wajja A, Ntambi L, Okwera A, Aziz MA, Hirsch C, Johnson J, Toossi Z, Mugerwa R, Mugyenyi P, Colebunders R, Ellner J, Vanham G. T cell activation, apoptosis and cytokine dysregulation in the (co)pathogenesis of HIV and pulmonary tuberculosis (TB). Clin Exp Immunol. 2000 Dec; 122(3):350-7. PMID: 11122240.
      Citations:    
    Hirsch's Networks
    Click the
    Explore
    buttons for more information and interactive visualizations!
    Concepts (197)
    Explore
    _
    Similar People (60)
    Explore
    _
    Same Department Expand Description
    Explore
    _